Lecture series: Klebsiella pneumoniae genomic epidemiology

The KlebNET team are pleased to share slides from the “Klebsiella pneumoniae Genomic Epidemiology and Antimicrobial Resistance” lecture series!

PDFs of the slides are available at: https://github.com/klebgenomics/KlebNetTrainingSep2025

A version of these slides were presented live by KlebNET team members as part of the GenEpi-BioTrain – Genetic Epidemiology and Bioinformatics Training Programme run by the European CDC (ECDC).

To see/hear the video recordings of the KlebNET lectures you need to enrol (free!) in the GenEpi-BioTrain and navigate to the Klebsiella session.

Lecture topics

1. Introduction to Klebsiella pneumoniae – Kat Holt, London School of Hygiene and Tropical Medicine, UK

2. Bacterial strain taxonomy using LIN codes – Sylvain Brisse, Institut Pasteur, Paris, France

3. In silico serotyping of Klebsiella – Tom Stanton, Monash University, Australia

4. K. pneumoniae genome analysis with Kleborate – Margaret Lam, Monash University, Australia

5. Convergence of hypervirulence and AMR – Margaret Lam, Monash University, Australia

6. Seroepidemiology of Klebsiella – Kelly Wyres, Monash University, Australia

7. One Health genomic surveillance of K. pneumoniae – Marit Hetland, Stavanger University Hospital, Norway