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The Kaptive v3 code was released a few months back. Now in this preprint, we describe the updates to methodology, and quantify the improvements to performance in terms of speed (now ~1 second per genome), typeability (now returning good quality calls for ≥96% of genomes down to 20x read depth) and accuracy for K and O locus identification!

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About KlebNET-GSP

Supported by the University of Oxford, Institut Pasteur and the London School of Hygiene & Tropical Medicine

Funded in part by the Bill & Melinda Gates Foundation